Environmental Chemistry II: Atmospheric Chemistry — Particles, Ions and Radicals, Chemical Speciation, the Formation of Particulate Matter, Thermochemical and Photochemical Reactions, Oxygen and Ozone Chemistry, Photochemical Smog, and CO, O₃, PAN, VOCs, POPs and Carcinogens in the Air

This chapter is the atmospheric half of Unit II's second item, joined to the gaseous toxicants that the syllabus lists among its toxic chemicals. It covers the particles, ions and radicals of the atmosphere, with the hydroxyl radical at the centre; what chemical speciation means and why it decides toxicity; how sulphate, nitrate and organic particles form from gases; the thermochemical formation of nitrogen oxides in flames and the photochemical reactions driven by sunlight; the Chapman cycle of stratospheric ozone and its catalytic destruction; the chemistry of photochemical smog set against the London type; and carbon monoxide, ozone, PAN, volatile organic compounds, persistent organic pollutants and the recognised carcinogens in air. The water, soil and metal chemistry of the unit follows in the next chapter.

1. Particles, ions and radicals in the atmosphere, and chemical speciation

Most atmospheric chemistry is radical chemistry. A radical has an unpaired electron and reacts fast. The most important is the hydroxyl radical, OH, called the detergent of the atmosphere because it begins the oxidation of almost every trace gas, from methane and carbon monoxide to sulphur dioxide and the hydrocarbons. It is formed mainly when ultraviolet light below about 320 nm splits ozone into an excited oxygen atom, O(¹D), which reacts with water vapour: O(¹D) + H₂O → 2OH. Its daytime concentration is tiny, around a million molecules per cubic centimetre, but its reactivity makes it the atmosphere's main sink. Other radicals are the hydroperoxyl radical HO₂, organic peroxy radicals RO₂ and, at night when there is no sunlight to photolyse it, the nitrate radical NO₃. Ions are formed by cosmic rays and radioactivity near the ground and dominate the ionosphere, where solar radiation ionises the thin gas.

Particle modeSizeOrigin and fate
Nucleation (ultrafine)below about 0.1 µmNew particles from gas-to-particle conversion and fresh combustion; grow quickly by coagulation
Accumulationabout 0.1 to 2.5 µmGrown nucleation particles and condensed secondary sulphate, nitrate and organics; settle slowly, stay days to weeks, travel far and penetrate deep into the lungs
Coarseabove about 2.5 µmMechanically generated dust, sea salt, pollen and road dust; settle within hours, deposited in the upper airways

Chemical speciation is the distribution of an element among its chemical forms: oxidation states, inorganic and organic compounds, complexes, and dissolved or particulate phases. It matters because toxicity, mobility and bioavailability depend on the species, not the total. Chromium(VI) is soluble, mobile and carcinogenic while chromium(III) is far less toxic and is an essential trace nutrient; methylmercury crosses biological membranes and biomagnifies while inorganic mercury does so much less; arsenite, As(III), is more toxic than arsenate, As(V). In air, particulate matter of the same mass can be benign sea salt or toxic metal-rich soot, which is why particles are analysed for sulphate, nitrate, ammonium, organic and elemental carbon and metals rather than weighed alone.

2. The formation of particulate matter and thermochemical and photochemical reactions

Secondary inorganic particles form from gases. Sulphur dioxide is oxidised to sulphuric acid in the gas phase, beginning with SO₂ + OH, and faster still in cloud droplets, where hydrogen peroxide and ozone oxidise dissolved SO₂. Nitrogen dioxide is converted to nitric acid by OH by day (NO₂ + OH → HNO₃) and through N₂O₅ at night. Both acids are neutralised by ammonia, mostly from agriculture, forming ammonium sulphate and ammonium nitrate particles, which is why ammonia control helps reduce PM₂.₅. Secondary organic aerosol forms when volatile organic compounds, from vehicles and solvents and from trees (isoprene and terpenes), are oxidised to products of low volatility that condense. Primary particles, by contrast, are emitted as particles: soot, fly ash, dust and sea spray.

Thermochemical reactions are driven by heat. In flames, nitrogen oxides form in three ways. Thermal NOx comes from atmospheric nitrogen by the Zeldovich mechanism, N₂ + O → NO + N and N + O₂ → NO + O, which needs very high temperatures (significant above about 1,500 °C) and rises steeply with flame temperature and residence time; fuel NOx comes from nitrogen bound in the fuel, important for coal; and prompt NOx forms fast in fuel-rich flame fronts. This is why low-NOx burners, staged combustion and flue-gas recirculation work by lowering peak flame temperature or oxygen. Photochemical reactions are driven by the absorption of a photon. The key tropospheric one is the photolysis of nitrogen dioxide by light below about 420 nm: NO₂ + hν → NO + O, followed by O + O₂ + M → O₃ + M, where M is any third molecule that carries off excess energy; ozone is then removed by NO + O₃ → NO₂ + O₂. Left alone these three reactions make a null cycle, a photostationary state in which ozone does not accumulate.

3. Oxygen and ozone chemistry: the Chapman cycle and ozone depletion

Sydney Chapman explained stratospheric ozone in 1930 with four reactions. Ultraviolet light below about 242 nm splits oxygen molecules, O₂ + hν → 2O; each atom combines with O₂, O + O₂ + M → O₃ + M, forming ozone; ozone absorbs ultraviolet between about 200 and 320 nm and is split back, O₃ + hν → O₂ + O, which is the reaction that shields the surface and heats the stratosphere; and an oxygen atom destroys ozone, O + O₃ → 2O₂. Because the Chapman cycle alone predicts more ozone than is observed, catalytic cycles must also remove it. In each, a catalyst X is regenerated: X + O₃ → XO + O₂, then XO + O → X + O₂, net O + O₃ → 2O₂. X can be OH, NO or, most destructively, chlorine and bromine atoms released from chlorofluorocarbons and halons, which reach the stratosphere intact because they are inert in the troposphere; a single chlorine atom can destroy on the order of a hundred thousand ozone molecules before it is locked into a reservoir such as HCl or ClONO₂.

The Antarctic ozone hole, reported by Farman, Gardiner and Shanklin in 1985, forms every southern spring. In the polar winter vortex, temperatures below about −78 °C form polar stratospheric clouds, on whose surfaces the reservoirs HCl and ClONO₂ are converted into Cl₂; when sunlight returns in September, Cl₂ is photolysed and chlorine destroys ozone rapidly. Total ozone is measured in Dobson units: one Dobson unit is a layer of pure ozone 0.01 mm thick at standard temperature and pressure, so the global average of about 300 DU would be a layer just 3 mm thick, and the ozone hole is conventionally the area below 220 DU. Stratospheric ozone is protective; tropospheric ozone, formed in smog, is a pollutant and a greenhouse gas. The two are chemically identical, and the difference is where they are.

⚠️ "Good up high, bad nearby"
A question that asks whether ozone is a pollutant has two right answers depending on altitude. In the stratosphere it absorbs harmful ultraviolet; at ground level it damages lungs and crops and is a criteria pollutant with a national standard. Neither the Montreal Protocol nor smog control is about the other kind of ozone.

4. Photochemical smog

Photochemical smog forms when nitrogen oxides and volatile organic compounds react in strong sunlight, typically in warm, sunny, still weather under a subsidence inversion, the conditions first studied in Los Angeles in the 1950s by Haagen-Smit. The key step breaks the photostationary null cycle. OH attacks a hydrocarbon to form an organic peroxy radical, RO₂, which converts NO to NO₂ without using up ozone: RO₂ + NO → RO + NO₂. Each NO₂ then photolyses to make more ozone, while the NO that would have destroyed it has been consumed, so ozone accumulates. The products include ozone, aldehydes, nitric acid and peroxyacetyl nitrate (PAN, CH₃C(O)OONO₂), a strong eye irritant and phytotoxin that also carries NOx over long distances and releases it on warming.

FeaturePhotochemical (Los Angeles) smogClassical (London) smog
Chemical natureOxidisingReducing
Main ingredientsNOx, VOCs, ozone, PAN, aldehydesSO₂, smoke and soot, sulphuric acid droplets
WeatherWarm, sunny, dry, low humidityCold, damp, foggy
Time of peakMidday and afternoonEarly morning and night
Main sourceMotor vehiclesCoal burning
Classic episodeLos Angeles from the 1940sLondon, December 1952, about 4,000 excess deaths in the first days and many more later

The daily cycle on a smoggy day follows the chemistry: NO peaks with the morning traffic, NO₂ peaks an hour or two later as NO is oxidised, and ozone peaks in the early afternoon, after hours of sunlight, often downwind of the city. Whether ozone falls more when NOx or when VOCs are cut depends on the regime: in NOx-rich city centres it is VOC-limited, and cutting NOx alone can briefly raise ozone because less NO is left to remove it; in suburbs and rural areas it is NOx-limited.

5. Carbon monoxide, ozone, PAN, VOCs, persistent organic pollutants and carcinogens in the air

Carbon monoxide, from incomplete combustion, binds haemoglobin roughly 200 to 250 times more strongly than oxygen, forming carboxyhaemoglobin and starving tissues of oxygen; the heart and brain are affected first, and exposure in closed rooms with charcoal stoves or running engines can be fatal. Ground-level ozone is a strong oxidant that inflames the airways, reduces lung function and damages leaves, reducing crop yields; PAN adds eye irritation and plant injury. Volatile organic compounds are organic chemicals with high vapour pressure at room temperature, among them benzene, toluene, xylenes and formaldehyde; they matter both as smog precursors and directly, benzene being a cause of leukaemia and formaldehyde of nasopharyngeal cancer.

Persistent organic pollutants are organic chemicals that resist degradation, accumulate in fatty tissue, travel long distances through the air and are toxic. Their long-range transport works by repeated evaporation in warm places and condensation in cold ones, the "grasshopper effect" or global distillation, which is why they are found in Arctic mammals and in the breast milk of Inuit women far from any source. The Stockholm Convention (2001, in force 2004) began with twelve, the "dirty dozen": aldrin, chlordane, DDT, dieldrin, endrin, heptachlor, hexachlorobenzene, mirex, toxaphene, polychlorinated biphenyls, and the dioxins and furans; others such as lindane and endosulfan have been added since.

Air carcinogen (IARC Group 1)Main sourcesPrincipal cancer
BenzenePetrol vapour, vehicle exhaust, tobacco smokeLeukaemia
Benzo[a]pyrene and other PAHsIncomplete combustion of coal, wood, diesel, tobaccoLung and skin
Asbestos fibresOld insulation, brake linings, cement sheetsMesothelioma and lung cancer
RadonUranium in soil and rock, entering buildingsLung
Diesel engine exhaust (classified 2012) and outdoor air pollution with its particulate matter (classified 2013)Vehicles, industry, combustionLung

Key takeaways

  • The hydroxyl radical, formed from ozone photolysis and water vapour, begins the oxidation of almost every trace gas; speciation, not total concentration, decides toxicity and mobility.
  • SO₂ and NOx become sulphate and nitrate particles, neutralised by ammonia, and VOCs form secondary organic aerosol; the accumulation mode (0.1 to 2.5 µm) lives longest and penetrates deepest.
  • Thermal NOx forms by the Zeldovich mechanism at high flame temperatures; NO₂ photolysis makes ozone, which NO removes again in a photostationary null cycle.
  • The Chapman cycle makes and destroys stratospheric ozone, and chlorine and bromine catalytic cycles deplete it; one Dobson unit is 0.01 mm of ozone at STP and the hole is below 220 DU.
  • Photochemical smog is oxidising and forms when RO₂ converts NO to NO₂, letting ozone and PAN accumulate by afternoon; CO blocks haemoglobin, and POPs and IARC Group 1 carcinogens such as benzene and benzo[a]pyrene complete the toxic list.

Practice questions (10)

Attempt each one before opening the answer. Every explanation names the tempting wrong option as well as the right one, because that is where marks are lost.

  1. Which species is called the "detergent of the atmosphere" because it begins the oxidation of most trace gases?

    1. The hydroxyl radical, OH
    2. Carbon monoxide, CO
    3. The nitrate radical, NO₃
    4. Molecular oxygen, O₂
    Show answer

    Answer: A — The hydroxyl radical, OH

    OH reacts with methane, CO, SO₂, NO₂ and hydrocarbons and is the atmosphere's main oxidising sink. O₂ is too unreactive, NO₃ matters only at night, and CO is itself one of the gases OH removes.
  2. Compared with classical London smog, photochemical smog is

    1. oxidising, formed mainly from coal burning in winter nights
    2. oxidising, formed from NOx and VOCs in warm sunny weather, with ozone and PAN as key products
    3. reducing, formed from SO₂ and smoke in cold foggy weather
    4. reducing, with a peak during the morning rush hour
    Show answer

    Answer: B — oxidising, formed from NOx and VOCs in warm sunny weather, with ozone and PAN as key products

    Photochemical smog is oxidising, driven by sunlight acting on vehicle NOx and VOCs, and peaks in the afternoon. The reducing SO₂-and-smoke mixture of cold, foggy weather is London smog, whose main source was coal.
  3. Which of the following are secondary air pollutants? Select all that apply.

    1. Peroxyacetyl nitrate (PAN)
    2. Ground-level ozone
    3. Carbon monoxide from exhaust
    4. Ammonium sulphate particles
    Show answer

    Answer: A — Peroxyacetyl nitrate (PAN); B — Ground-level ozone; D — Ammonium sulphate particles

    Ozone, PAN and ammonium sulphate are not emitted but formed in the air from precursors: NOx and VOCs for the first two, SO₂ and ammonia for the third. Carbon monoxide comes directly out of the exhaust pipe and is a primary pollutant.
  4. Assertion (A): On a smoggy day ozone peaks in the early afternoon rather than during the morning rush hour. Reason (R): Ozone is formed by photochemical reactions of NOx and VOCs that need hours of sunlight. Choose the correct option.

    1. Both A and R are true, and R is the correct explanation of A
    2. Both A and R are true, but R is not the correct explanation of A
    3. A is true, but R is false
    4. A is false, but R is true
    Show answer

    Answer: A — Both A and R are true, and R is the correct explanation of A

    Both are true and R explains A. The morning traffic emits NO and VOCs, but converting NO to NO₂ through peroxy radicals and then photolysing NO₂ to build up ozone takes hours of sunshine, so ozone lags the emissions and peaks after midday.
  5. In the Chapman mechanism, stratospheric ozone is formed by

    1. photolysis of NO₂ by visible light, followed by O + O₂ + M → O₃ + M
    2. photolysis of O₂ by ultraviolet light below about 242 nm, followed by O + O₂ + M → O₃ + M
    3. lightning discharges in the stratosphere
    4. reaction of chlorine atoms with oxygen molecules
    Show answer

    Answer: B — photolysis of O₂ by ultraviolet light below about 242 nm, followed by O + O₂ + M → O₃ + M

    Chapman's source of oxygen atoms is O₂ split by hard ultraviolet, which only exists at altitude. NO₂ photolysis is the tropospheric route to smog ozone, and chlorine destroys ozone rather than forming it.
  6. The total ozone column above a station, brought to standard temperature and pressure, would form a layer 3 mm thick. What is the total ozone in Dobson units?

    Numerical answer — type the value.

    Show answer

    Answer: 300

    One Dobson unit is 0.01 mm of pure ozone at STP, so 3 mm is 3 ÷ 0.01 = 300 DU, close to the global average. Taking one Dobson unit as 1 mm or 0.1 mm gives 3 or 30, which would be far below the 220 DU that defines the ozone hole.
  7. In the catalytic cycle Cl + O₃ → ClO + O₂ followed by ClO + O → Cl + O₂, the net reaction is

    1. O₂ + O → O₃, forming ozone
    2. Cl + O₃ → ClO + O₂, with chlorine consumed
    3. O + O₃ → 2O₂, with the chlorine atom regenerated
    4. 2Cl + O₂ → 2ClO, removing oxygen
    Show answer

    Answer: C — O + O₃ → 2O₂, with the chlorine atom regenerated

    Adding the two steps cancels Cl and ClO, leaving O + O₃ → 2O₂. Because chlorine comes out as it went in, one atom can destroy very many ozone molecules until it is captured in a reservoir such as HCl or ClONO₂; that regeneration is what makes the cycle catalytic.
  8. Which of the following were among the original twelve persistent organic pollutants listed under the Stockholm Convention of 2001? Select all that apply.

    1. DDT
    2. Polychlorinated biphenyls (PCBs)
    3. Endosulfan
    4. Lindane
    Show answer

    Answer: A — DDT; B — Polychlorinated biphenyls (PCBs)

    DDT and PCBs were in the "dirty dozen" with aldrin, chlordane, dieldrin, endrin, heptachlor, hexachlorobenzene, mirex, toxaphene, dioxins and furans. Lindane was added in 2009 and endosulfan in 2011, so neither was among the original twelve.
  9. Thermal NOx formation in a furnace is most effectively reduced by

    1. increasing the residence time of gases in the hottest zone
    2. raising the excess air to make the flame hotter and leaner
    3. switching to a fuel with more bound nitrogen
    4. lowering the peak flame temperature, for example by staged combustion or flue-gas recirculation
    Show answer

    Answer: D — lowering the peak flame temperature, for example by staged combustion or flue-gas recirculation

    The Zeldovich reactions that form thermal NOx from atmospheric nitrogen rise steeply with temperature, oxygen availability and residence time, so cooler, oxygen-staged flames form less. More fuel nitrogen would raise fuel NOx, and longer residence at peak temperature raises thermal NOx.
  10. Convert an ozone concentration of 0.05 ppm to µg/m³ at 25 °C and 1 atm, taking the molar volume as 24.45 L and the molar mass of ozone as 48. Give the answer to the nearest whole number.

    Numerical answer — type the value.

    Show answer

    Answer: 98

    µg/m³ = ppm × M × 1000 ÷ 24.45 = 0.05 × 48 × 1000 ÷ 24.45 = 2400 ÷ 24.45 = 98.2, which is 98 µg/m³. Using 22.4 L, the molar volume at 0 °C, gives 107 and is the usual slip when the temperature is 25 °C.