Developmental Biology: Gametes, Embryos, Differentiation, Metamorphosis and Stem Cells
2. Cleavage, gastrulation and neurulation
Cleavage divides the zygote into blastomeres without growth, so cells halve in size and the nucleus-to-cytoplasm ratio rises. Early cycles in frog and sea urchin are only S and M phases, driven by oscillating cyclin B–Cdk1 (MPF), so n synchronous divisions give 2ⁿ cells. In Xenopus about 12 such cycles (2¹² = 4,096 cells) lead to the midblastula transition: zygotic transcription starts, gap phases appear and divisions lose synchrony. Yolk sets the pattern, because yolk impedes furrowing.
| Yolk | Cleavage | Examples |
|---|---|---|
| Little, evenly spread (isolecithal) | Holoblastic: radial, spiral or rotational | Sea urchin (radial); annelids and molluscs (spiral); eutherian mammals (rotational) |
| Moderate, vegetal (mesolecithal) | Holoblastic, unequal radial | Frogs |
| Massive, at one pole (telolecithal) | Meroblastic discoidal: a blastodisc on the yolk | Birds, reptiles, bony fish |
| Central (centrolecithal) | Meroblastic superficial: nuclei divide in a syncytium, then cellularise at the surface | Most insects, Drosophila |
Gastrulation rearranges the blastula into three germ layers by invagination (sea urchin archenteron), involution (frog mesoderm rolling over the dorsal lip), ingression (sea urchin primary mesenchyme; chick primitive streak), delamination and epiboly (spreading of the frog animal cap or the zebrafish enveloping layer). Ectoderm gives epidermis, the nervous system and neural crest; mesoderm notochord, muscle, skeleton, kidney, heart, blood and gonads; endoderm the gut lining, liver, pancreas, lung epithelium and thyroid. In protostomes the blastopore becomes the mouth; in deuterostomes (echinoderms, chordates) it becomes the anus. The mammalian blastocyst first separates trophoblast (placenta) from the inner cell mass (embryo proper).
In neurulation the notochord induces the overlying ectoderm to form the neural plate, whose folds fuse into the neural tube (brain and spinal cord); failure to close causes spina bifida or anencephaly. Cells at the fold borders become the neural crest, a migratory population that forms melanocytes, sensory, autonomic and enteric neurons, Schwann cells, the adrenal medulla and much of the facial skeleton.
3. Commitment, differentiation, induction and organogenesis
Differentiation is differential gene expression from an equivalent genome. Nuclear transfer proved genomic equivalence: nuclei from differentiated Xenopus tadpole cells, put into enucleated eggs, could direct development to adult frogs (Gurdon), and the sheep Dolly (1996) came from an adult mammary-cell nucleus. Commitment comes in two steps: a specified cell differentiates autonomously in a neutral environment but can still be redirected; a determined cell keeps its fate even when grafted elsewhere.
- Autonomous (mosaic) specification: cytoplasmic determinants segregate into particular blastomeres; an isolated blastomere makes what it would have made in the embryo, and losing it leaves a gap. Example: tunicate yellow-crescent cytoplasm (macho-1 mRNA) makes tail muscle.
- Conditional (regulative) specification: fate depends on position and neighbours, so the embryo can compensate. Separated blastomeres of a two-cell sea urchin each form a complete small larva (Driesch).
- Syncytial specification: in the early Drosophila embryo, nuclei share one cytoplasm and read gradients of transcription factors directly.
Organogenesis runs on induction: one tissue changes the fate of a competent neighbour. The vertebrate eye is the model chain: the optic vesicle (from the forebrain) induces head ectoderm to form the lens placode; the lens vesicle shapes the optic cup into retina; the lens then induces the cornea. The kidney is reciprocal: metanephric mesenchyme makes the ureteric bud branch, and the bud makes the mesenchyme form nephrons. In the limb bud the apical ectodermal ridge (AER, FGF signals) drives proximal-to-distal outgrowth, so removing it truncates the limb (earlier removal, more truncation); the zone of polarising activity (ZPA, Sonic hedgehog) sets the anterior–posterior digit pattern, and a ZPA graft to the anterior margin gives a mirror-image duplication of digits; dorsal ectoderm (Wnt7a) sets dorsal–ventral identity. BMP-driven apoptosis removes interdigital tissue; duck feet keep their webbing where a BMP antagonist is expressed.
4. Genetic and molecular basis of development
The Drosophila anterior–posterior axis is built by a transcriptional cascade, each class of genes refining the pattern set by the one before. Maternal bicoid mRNA is anchored at the anterior pole; its protein diffuses into a gradient and acts as a morphogen, switching on zygotic hunchback at high concentration. Maternal nanos at the posterior represses translation of hunchback mRNA. Because these are maternal-effect genes, the embryo’s phenotype follows the mother’s genotype, not its own.
| Class | Examples | Loss-of-function phenotype |
|---|---|---|
| Maternal effect (coordinate) | bicoid, nanos, torso | bicoid mothers: embryos lack head and thorax and form posterior terminal structures at both ends |
| Gap | hunchback, Krüppel, knirps, giant | A block of adjacent segments missing |
| Pair-rule (seven stripes) | even-skipped, fushi tarazu, hairy | Alternate segment-width regions missing: half the number of segments |
| Segment polarity | engrailed, wingless, hedgehog | Part of every segment replaced by a mirror image of the rest |
| Homeotic (Hox) | Antennapedia and bithorax complexes (Antp, Ubx) | Segment identity changes: loss of Ubx turns the haltere-bearing third thoracic segment towards the wing-bearing second |
Hox genes encode homeodomain transcription factors (a 60-amino-acid DNA-binding domain encoded by the 180-bp homeobox) and show colinearity: their order on the chromosome matches their expression along the body axis. Mammals carry four Hox clusters (HoxA to HoxD). A small toolkit of signalling pathways is reused in every organ: Wnt, Hedgehog, TGF-β/BMP, FGF (receptor tyrosine kinase), Notch–Delta (contact signalling that makes neighbours different by lateral inhibition) and retinoic acid (a nuclear receptor ligand).
5. Metamorphosis in amphibians and insects
Amphibian metamorphosis is driven by thyroid hormones. The gland releases mainly T₄, which deiodinases in target tissues convert to the more active T₃; T₃ binds nuclear thyroid hormone receptors that regulate transcription. One signal produces region-specific responses: the tail and gills are resorbed by apoptosis and matrix-degrading enzymes, limbs grow, the gut is remodelled for a carnivorous diet, larval haemoglobin is replaced by adult haemoglobin, and the liver induces urea-cycle enzymes so excretion shifts from ammonia to urea. Blocking the thyroid (thyroidectomy or goitrogens such as thiourea) gives giant tadpoles that never metamorphose; the axolotl stays larval yet breeds (paedomorphosis) but metamorphoses when given thyroid hormone.
Insects are ametabolous (silverfish: no metamorphosis), hemimetabolous (cockroach, grasshopper: nymphs moult gradually into adults, no pupa) or holometabolous (flies, beetles, butterflies: larva, pupa and adult, with adult structures built from imaginal discs). The brain’s prothoracicotropic hormone (PTTH) makes the prothoracic gland secrete ecdysone, converted in tissues to active 20-hydroxyecdysone, which triggers every moult. Juvenile hormone (JH) from the corpora allata decides the kind of moult: high JH gives a larval moult, low JH a pupal moult and no JH the adult moult.
6. Model organisms in developmental biology
A model organism is chosen for practical traits (short generation, many embryos, easy access, genetic tools) and studied on the bet that its mechanisms are shared, a bet the conserved Hox genes and signalling pathways have repaid.
| Organism | Practical strengths | Typical discoveries |
|---|---|---|
| Drosophila melanogaster | About 10-day generation at 25 °C, polytene chromosomes, balancer chromosomes, large mutant screens | Maternal, segmentation and Hox genes; Notch, Hedgehog and Wnt pathways |
| Caenorhabditis elegans | Transparent, self-fertilising hermaphrodite with an invariant cell lineage (959 somatic nuclei in the adult) | Genes of programmed cell death (131 cells die), the first microRNA (lin-4), RNA interference |
| Zebrafish, Danio rerio | Transparent embryos developing outside the mother, many per cross | Vertebrate forward-genetic screens, organ formation, heart and fin regeneration |
| Xenopus laevis | Large eggs obtainable by hormone injection; microinjection and explants | Induction and the organizer, MPF and the cell cycle, nuclear transfer |
| Chick, Gallus gallus | Embryo reached through a window in the shell; grafting and bead implants | Limb AER and ZPA, primitive streak, neural crest migration |
| Mouse, Mus musculus | A mammal with embryonic stem cells, gene knockouts and transgenics | Mammalian gene function, genomic imprinting, placentation |
| Sea urchin | External fertilisation, clear synchronous embryos | Fertilisation and polyspermy blocks, cyclins, gene regulatory networks |
7. Stem cells
A stem cell both self-renews and gives rise to differentiated cells, either by asymmetric division (one daughter stays a stem cell) or by population asymmetry (some divisions give two stem cells, others two committed cells). Stem cells live in a niche that keeps them undifferentiated: the hub or cap cells holding Drosophila germline stem cells, the bone-marrow niche of haematopoietic stem cells, and the intestinal crypt base where Lgr5⁺ stem cells sit beside Wnt-supplying Paneth cells.
| Potency | What it can form | Examples |
|---|---|---|
| Totipotent | The whole organism including extraembryonic tissues such as trophoblast | Zygote, early mammalian blastomeres |
| Pluripotent | All three germ layers and germ cells, but not trophoblast | Inner cell mass, embryonic stem (ES) cells, iPS cells |
| Multipotent | Several cell types of one tissue family | Haematopoietic stem cells (all blood lineages), neural stem cells |
| Unipotent | One differentiated type | Spermatogonial stem cells (sperm only) |
ES cells come from the inner cell mass (mouse 1981, human 1998). Pluripotency is tested by teratoma formation in immunodeficient mice and, in the mouse, by contribution to all tissues and the germ line of a chimera. Induced pluripotent stem (iPS) cells: Takahashi and Yamanaka (2006) reprogrammed mouse fibroblasts with four transcription factors, Oct3/4, Sox2, Klf4 and c-Myc; Gurdon and Yamanaka shared the 2012 Nobel Prize. iPS cells avoid embryo use and immune mismatch, but c-Myc is an oncogene and residual undifferentiated cells can form teratomas. Bone-marrow (haematopoietic stem cell) transplantation remains the established clinical stem-cell therapy.
Key takeaways
- One primary spermatocyte gives 4 sperm, one primary oocyte 1 egg and 2 or 3 polar bodies; DNA goes 4C (primary) to 2C (secondary) to 1C (spermatid or egg). Mammalian oocytes arrest at diplotene of prophase I and again at metaphase II.
- Yolk sets cleavage: isolecithal holoblastic, telolecithal discoidal, centrolecithal superficial. n synchronous cleavages give 2ⁿ cells; the Xenopus midblastula transition follows about 12 cycles.
- Mosaic embryos lose what an ablated blastomere would make; regulative embryos compensate. Organs form by induction of competent tissue, often reciprocal (eye, kidney, limb AER and ZPA).
- Drosophila patterning cascades from maternal-effect (bicoid, nanos) to gap, pair-rule, segment-polarity and Hox genes, each with a diagnostic mutant phenotype; the amphibian organizer works by antagonising BMP.
- Amphibian metamorphosis needs T₃ acting on nuclear receptors; insect moults need 20-hydroxyecdysone, and juvenile hormone decides larval, pupal or adult outcome.
- Totipotent > pluripotent (ICM, ES, iPS: no trophoblast) > multipotent (HSC) > unipotent. iPS cells came from Oct3/4, Sox2, Klf4 and c-Myc; stem cells depend on their niche.
Practice questions (18)
Attempt each one before opening the answer. Every explanation names the tempting wrong option as well as the right one, because that is where marks are lost.
In most mammals, including humans, the oocyte released at ovulation is arrested at which stage?
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Answer: B — Metaphase of the second meiotic division, finished only if a sperm enters
The LH surge releases the diplotene arrest, so meiosis I is completed and the first polar body is extruded before ovulation; the secondary oocyte then arrests at metaphase II and completes meiosis II, giving the second polar body, only after a sperm enters. Diplotene is the tempting choice, but that arrest belongs to the primary oocyte inside the follicle before the LH surge, not to the ovulated cell.A sea urchin egg is treated with a drug that blocks its IP₃ receptors and is then inseminated. Which event of fertilisation would fail?
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Answer: D — Exocytosis of cortical granules and lifting of the fertilisation envelope
After fusion, IP₃ opens ER Ca²⁺ channels and the resulting Ca²⁺ wave drives cortical granule exocytosis, which raises the fertilisation envelope (the slow block). With the egg's IP₃ receptors blocked, this step fails. The acrosome reaction is the tempting distractor because it is also a Ca²⁺-triggered exocytosis, but it happens in the sperm, before fusion, and does not use the egg's receptors; bindin binding and membrane fusion also precede the IP₃ step.In a mammal, 250 primary spermatocytes and 120 secondary spermatocytes in a testis, and 80 primary oocytes and 40 secondary oocytes in an ovary, all complete meiosis normally (assume each secondary oocyte is fertilised so that meiosis II is completed). The total number of functional gametes (sperm plus eggs) formed is ____.
Numerical answer — type the value.
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Answer: 1360
Each primary spermatocyte gives 4 sperm: 250 × 4 = 1000. Each secondary spermatocyte has only meiosis II left and gives 2: 120 × 2 = 240. Each oocyte, primary or secondary, gives just one egg, the other products being polar bodies: 80 + 40 = 120. Total = 1000 + 240 + 120 = 1360. Multiplying the oocytes by 4, or the secondary spermatocytes by 4, are the usual slips.A spermatid of a diploid mammal contains 3.2 pg of nuclear DNA. The nuclear DNA content, in pg, of a primary spermatocyte of the same animal in prophase I is ____ (to one decimal place).
Numerical answer — type the value.
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Answer: 12.8
A spermatid is haploid with unreplicated chromosomes, so it is 1C = 3.2 pg. A primary spermatocyte is diploid and has completed S phase before entering meiosis, so in prophase I it is 4C = 4 × 3.2 = 12.8 pg. Answering 6.4 (2C) forgets the premeiotic S phase; 6.4 pg is the content of a secondary spermatocyte.A researcher wants to follow every somatic cell division from zygote to adult and to know in advance exactly which cells will undergo programmed death. Which model organism suits this best?
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Answer: C — *Caenorhabditis elegans*, because its complete somatic cell lineage is invariant
In C. elegans the same divisions occur in every individual, the whole somatic lineage has been traced, and the 131 cells that die in hermaphrodite development are known by name, which is how the ced cell-death genes were found. Zebrafish is the tempting answer because its embryos are transparent, but its cell lineages vary between individuals, so cell fates cannot be predicted cell by cell. Balancers and injectable eggs are real strengths of the other two, but not for this purpose.In an embryo whose early cleavages are synchronous, the first cleavage is completed 90 min after fertilisation and every later cleavage takes 30 min. Assuming all divisions stay synchronous and no cell dies, the number of blastomeres 250 min after fertilisation is ____.
Numerical answer — type the value.
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Answer: 64
Cleavages are completed at 90, 120, 150, 180, 210 and 240 min; the next would finish at 270 min, after the time asked. That is 6 cleavages, and n synchronous cleavages give 2ⁿ cells: 2⁶ = 64. A common slip is to divide 250 by 30 and forget that the first cleavage takes 90 min, or to count the 2-cell stage as cleavage zero.Which of the following statements about germ layers and their derivatives in vertebrates are correct?
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Answer: A — Melanocytes of the skin and chromaffin cells of the adrenal medulla both arise from the neural crest; B — The notochord is mesodermal and induces the overlying ectoderm to form the neural plate
Neural crest cells migrate to form pigment cells, the adrenal medulla, peripheral neurons and glia, and the notochord (chordamesoderm) induces neural plate formation. In deuterostomes the blastopore becomes the anus and the mouth forms secondarily; mouth-first is the protostome pattern. Hepatocytes and lung epithelium are endodermal outgrowths of the gut tube; only their connective tissue and vessels are mesodermal.A fertilised Xenopus egg is injected with α-amanitin at a dose that blocks RNA polymerase II. What is the expected outcome?
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Answer: A — Cleavage proceeds normally to about the blastula stage, then the embryo fails to gastrulate
Before the midblastula transition (about 12 cycles) Xenopus cleavage runs on maternal mRNAs and proteins stored in the egg, including cyclin mRNA, so blocking transcription does not stop cleavage. Zygotic transcription becomes essential at the midblastula transition, so the embryo arrests before gastrulation. The tempting option about cyclin is wrong because cyclin is translated from stored maternal mRNA; development cannot reach a tadpole because gastrulation needs zygotic genes.In a tunicate embryo, removing the blastomere pair that inherits the yellow-crescent cytoplasm gives a larva without tail muscle, and the same blastomeres cultured in isolation still make muscle. These results show that tail-muscle fate is specified by
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Answer: C — autonomous specification by maternal determinants that segregate into those cells
A cell that makes its normal product when isolated, and whose removal leaves a gap that others do not fill, is autonomously (mosaic) specified; in tunicates the determinant is maternal macho-1 mRNA in the yellow crescent. Conditional specification is the tempting alternative, but it would predict that isolated blastomeres fail to make muscle without their neighbours. Regulative replacement is ruled out because the larva stays without tail muscle.A bead soaked in Sonic hedgehog protein is implanted beneath the apical ectodermal ridge at the anterior margin of an early chick wing bud. What is the expected result?
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Answer: B — A mirror-image duplication of the digits along the anterior–posterior axis
Sonic hedgehog is the signal of the zone of polarising activity. A second anterior source creates a second posterior-to-anterior gradient, so digits form in mirror image (for example 4-3-2-2-3-4 instead of 2-3-4). Truncation is the tempting distractor, but that follows removal of the AER (loss of FGF), not added Shh; dorsal–ventral identity depends on Wnt7a from the dorsal ectoderm.The corpora allata are surgically removed from an early-instar larva of a holometabolous insect, leaving its brain and prothoracic glands intact. At its next moult the larva is expected to
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Answer: D — moult early into a pupa and then emerge as a miniature but complete adult
The prothoracic glands still make ecdysone, so moulting continues, but juvenile hormone from the corpora allata is what keeps a moult larval. Without JH the next ecdysteroid pulse gives a pupal moult, and the small insect metamorphoses into a miniature adult. The giant-larva outcome is the tempting distractor, but it is what happens when active corpora allata are added to a last-instar larva, the opposite manipulation.Which of the following statements about anuran (frog) metamorphosis are correct?
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Answer: A — T₃, formed from T₄ by deiodinases in target tissues, acts through nuclear thyroid hormone receptors; B — Resorption of the tail involves apoptosis of tail cells and enzymatic breakdown of matrix; C — The liver induces urea-cycle enzymes, shifting nitrogen excretion from ammonia towards urea
T₃ is the active hormone and regulates transcription through nuclear receptors; it causes tail cells to die by apoptosis while matrix metalloproteinases remove the matrix, and it induces urea-cycle enzymes as the animal moves to land. Thiourea is a goitrogen that blocks thyroid hormone synthesis, so treated tadpoles keep growing as tadpoles and fail to metamorphose; they do not metamorphose early.A Drosophila female homozygous for a loss-of-function bicoid allele is mated to a wild-type male. What will her embryos look like?
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Answer: C — Lacking head and thorax, with posterior terminal structures at both ends
bicoid is a maternal-effect gene: its mRNA is made by the mother and placed at the anterior pole of the egg before fertilisation, so the embryo's phenotype follows the mother's genotype. With no Bicoid gradient, anterior structures fail and posterior terminal structures form at both ends. The tempting answer, a normal embryo rescued by the paternal allele, ignores that zygotic transcription starts too late to make the gradient. Seven stripes describe pair-rule genes, and Nanos stays posterior.A Drosophila larva has denticle belts for only half the normal number of segments, with every other segment-width region missing. The mutation most likely lies in
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Answer: A — *fushi tarazu*, a pair-rule gene expressed in seven stripes
Pair-rule genes are expressed in seven stripes, one per two segments, so loss of one removes alternate segment-width regions and halves the segment count; fushi tarazu means “too few segments” in Japanese. A gap mutant such as Krüppel loses a block of adjacent segments; a segment-polarity mutant such as engrailed keeps the segment number but replaces part of each with a mirror image; a homeotic mutant keeps the number but changes segment identity.Which of the following statements about the amphibian (Spemann) organizer are correct?
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Answer: A — It secretes chordin and noggin, which bind BMP and allow nearby ectoderm to become neural; B — A grafted dorsal lip induces a second axis whose neural tube is built mostly from host cells
The organizer works by secreting BMP antagonists (chordin, noggin, follistatin); ectoderm shielded from BMP becomes neural. In the Spemann–Mangold graft the pigment difference showed that the secondary neural tube came largely from host tissue, proving induction. BMP signalling instructs epidermis, so neural plate forms where BMP is lowest. Cortical rotation stabilises, not degrades, β-catenin on the dorsal side, which sets up the Nieuwkoop centre and then the organizer.Which set of transcription factors did Takahashi and Yamanaka use in 2006 to reprogram mouse fibroblasts into induced pluripotent stem cells?
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Answer: D — Oct3/4, Sox2, Klf4 and c-Myc
The 2006 mouse study screened 24 candidate genes and found that four, Oct3/4, Sox2, Klf4 and c-Myc, were enough to give pluripotent cells. Each distractor mixes a pluripotency factor with lineage-specifying factors (Pax6 for eye and neural, MyoD for muscle, Gata1 for erythroid, Hnf4 for liver, Pdx1, Ngn3 and MafA for pancreatic β-cells), which drive cells towards particular differentiated fates rather than back to pluripotency.Mouse embryonic stem cells injected into a host blastocyst contribute to every tissue of the resulting chimera, including its germ line, but essentially not to the trophoblast-derived parts of the placenta. The best description of these cells is
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Answer: B — pluripotent, because they form all embryonic lineages but not trophoblast
Contributing to all three germ layers and the germ line, but not to trophoblast, is the definition of pluripotency, matching the inner cell mass from which ES cells come. Totipotent is the tempting answer because every adult tissue is formed, but totipotency also requires the extraembryonic trophoblast, which only the zygote and early blastomeres can make. Contribution to tissues of all germ layers rules out multipotent and unipotent.An asynchronously dividing population of embryonic cells has a cell-cycle time of 24 h. Of 2,000 cells scored, 150 are in mitosis. Assuming that the fraction of cells in a phase equals the fraction of the cycle spent in it, the duration of M phase in minutes is ____.
Numerical answer — type the value.
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Answer: 108
Mitotic index = 150 ÷ 2000 = 0.075. Duration of M = 0.075 × 24 h = 1.8 h = 1.8 × 60 = 108 min. Forgetting to convert hours to minutes gives 1.8, the usual slip.