Biomolecules — Carbohydrates, Proteins and Nucleic Acids
Amino Acids and Proteins
An amino acid carries both a basic amino group and an acidic carboxyl group, so in solution it exists as a zwitterion — internally ionised, dipolar and overall neutral. That explains its high melting point and its solubility in water but not in organic solvents, and it explains amphoteric behaviour: the same molecule reacts with acid and with base. The pH at which the zwitterion has no net charge is the isoelectric point, and at that pH the amino acid does not migrate in an electric field, which is how mixtures are separated.
| Level | What it describes | Held together by |
|---|---|---|
| Primary | The sequence of amino acids | Peptide (covalent) bonds |
| Secondary | Local shape — alpha helix or beta sheet | Hydrogen bonds |
| Tertiary | The overall three-dimensional fold | Disulphide bridges, hydrophobic and ionic forces |
| Quaternary | How several folded chains assemble | The same weak forces between subunits |
Enzymes are proteins that catalyse with extraordinary specificity, work best near 310 K and a narrow pH, and are denatured outside those limits — which is why a fever is dangerous and why enzyme catalysis has no industrial equivalent at high temperature. Vitamins divide into water-soluble (B group and C, excreted and so needed regularly) and fat-soluble (A, D, E, K, stored in the liver and toxic in excess). The deficiency diseases most often asked are scurvy for C, beriberi for B₁, pernicious anaemia for B₁₂, night blindness for A, rickets for D and impaired clotting for K.
Nucleic Acids
| Feature | DNA | RNA |
|---|---|---|
| Sugar | 2-deoxy-D-ribose | D-ribose |
| Bases | A, G, C and thymine | A, G, C and uracil |
| Strands | Double helix | Usually single |
| Function | Stores and transmits genetic information | Carries out protein synthesis |
| Base pairing | A–T by two H bonds, G–C by three | A–U where pairing occurs |
A nucleoside is a base joined to a sugar; add a phosphate and it becomes a nucleotide, which is the repeating unit of the chain. The backbone is a sugar–phosphate chain and the bases point inwards. Note the naming trap: adenosine is the nucleoside, adenosine monophosphate the nucleotide, and only the phosphate-containing form appears in the polymer — a distinction questions test by asking which of four listed species is a nucleotide.
Key takeaways
- Sucrose is the standard non-reducing sugar, because both anomeric carbons are used in the linkage.
- Fructose reduces Tollens because alkali tautomerises it into glucose and mannose first.
- Glucose has five OH groups, an aldehyde and a straight chain — each established by a specific reaction.
- Amino acids exist as zwitterions, which is why they melt high and are amphoteric.
- Primary structure is peptide bonds; secondary is hydrogen bonds; tertiary adds disulphide bridges.
- Denaturation destroys secondary and tertiary structure but leaves the primary sequence intact.
- DNA has thymine and deoxyribose; RNA has uracil and ribose. A–T uses two H bonds, G–C three.
- A nucleoside is base plus sugar; adding phosphate makes it a nucleotide, the unit of the chain.
Practice questions (8)
Attempt each one before opening the answer. Every explanation names the tempting wrong option as well as the right one, because that is where marks are lost.
Which of the following is a non-reducing sugar?
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Answer: C — Sucrose
In sucrose the glycosidic linkage uses the anomeric carbon of both glucose and fructose, so no free aldehyde or ketone group is left and the sugar cannot reduce Tollens' or Fehling's reagent. Maltose and lactose each keep one anomeric carbon free and so are reducing, and glucose has an open aldehyde group in equilibrium with its ring form.Fructose gives a positive Tollens test although it is a ketose. This is because:
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Answer: B — In alkaline medium it tautomerises into glucose and mannose, which are aldehydes
Tollens' reagent is alkaline, and base promotes keto–enol tautomerism that converts fructose into the aldoses glucose and mannose; those aldehydes then reduce the silver ion. So the aldehyde group is created by the test conditions rather than being present at the outset — which is why an isolated ketone in a neutral medium gives no reaction at all.Denaturation of a protein destroys:
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Answer: B — Secondary and tertiary structure, leaving the primary intact
Heat, acid or alcohol break the hydrogen bonds and hydrophobic contacts that hold the folded shape, so the chain unravels and loses its biological activity, but the covalent peptide bonds of the primary sequence survive. That is why a boiled egg is still nutritious even though the albumin will never redissolve, and why only hydrolysis, not denaturation, breaks a protein down into amino acids.The base present in RNA but not in DNA is:
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Answer: B — Uracil
Adenine, guanine and cytosine occur in both nucleic acids; the fourth base differs, being thymine in DNA and uracil in RNA. The sugar differs too — deoxyribose in DNA and ribose in RNA — and those two substitutions together are what most questions on this comparison are testing.Amino acids have unusually high melting points because they exist as:
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Answer: B — Zwitterions with internal charge separation
The carboxyl group protonates the amino group internally, so the molecule carries both a positive and a negative site and behaves like a salt: strong electrostatic attractions between neighbours push the melting point far above what a molecule of that size would otherwise have. The same zwitterionic structure explains solubility in water but not in organic solvents, and amphoteric reactivity with both acid and base.Glucose forms a pentaacetate on treatment with acetic anhydride. This shows that glucose has:
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Answer: A — Five hydroxyl groups
Acetylation converts each free hydroxyl into an acetate ester, so counting five acetate groups counts five OH groups. Each of the other three facts is established by a different reaction: Tollens' or oxime formation for the aldehyde, reduction with HI to n-hexane for the straight chain, and nitric acid oxidation to a dicarboxylic acid for the terminal primary alcohol.Which vitamin deficiency causes scurvy?
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Answer: C — Vitamin C
Scurvy comes from a deficiency of ascorbic acid, vitamin C, which is water-soluble and therefore excreted rather than stored — so it must be supplied regularly. Vitamin A deficiency gives night blindness, B₁ gives beriberi and D gives rickets; the fat-soluble vitamins A, D, E and K are stored in the liver and can be toxic in excess, which the water-soluble ones generally are not.DNA rich in G–C pairs has a higher melting temperature than A–T rich DNA because:
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Answer: A — G–C pairs are held by three hydrogen bonds against two for A–T
Guanine pairs with cytosine through three hydrogen bonds while adenine pairs with thymine through only two, so more energy is needed to separate a G–C rich duplex. The base pairs are held by hydrogen bonds, not covalent ones — the covalent bonds run along each backbone — which is precisely why the strands can be separated and rejoined during replication.